Introduction | Acknowledgements | Quick Start | Background Knowledge | Using the Package | Getting Help | Issues, Bugs, and Fixes | Citing this Package | Basic Usage | User Interface | Example of GUI | Sample Code for GUI | References for GUI | File Input and Output | Example of File Input and Output | Sample Code for File Input and Output | References for File Input and Output | Advanced Usage | Training a NBC Model | References for Training a NBC Model | Evaluating a NBC Model | References for Evaluating a NBC Model | Plotting the Top Predicted Causes | Example of Plotting the Top Predicted Causes | References for Plotting the Top Predicted Causes | Functions | Utility Functions | Main Functions | Wrapper Functions | Extra User Functions | Data | Training and Testing Data | Format of Data | Examples of Data | Symptom Imputation Example | Sample Code for Data | Methods | Naive Bayes Classifier | Terms for Data | Terms for Metrics | Calculation of Metrics at the Individual Level | Calculation of Metrics at the Population Level | References for Methods | Developer Notes | Internal Functions | External Functions | Extra Functions
Package: nbc4va 1.2
nbc4va: Bayes Classifier for Verbal Autopsy Data
An implementation of the Naive Bayes Classifier (NBC) algorithm used for Verbal Autopsy (VA) built on code from Miasnikof et al (2015) <doi:10.1186/s12916-015-0521-2>.
Authors:
nbc4va_1.2.tar.gz
nbc4va_1.2.zip(r-4.7)nbc4va_1.2.zip(r-4.6)nbc4va_1.2.zip(r-4.5)
nbc4va_1.2.tgz(r-4.6-any)nbc4va_1.2.tgz(r-4.5-any)
nbc4va_1.2.tar.gz(r-4.7-any)nbc4va_1.2.tar.gz(r-4.6-any)
nbc4va_1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
nbc4va/json (API)
| # Install 'nbc4va' in R: |
| install.packages('nbc4va', repos = c('https://rrwen.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rrwen/nbc4va/issues
Datasets:
- nbc4vaData - Example of clean data in nbc4va
- nbc4vaDataRaw - Example of unclean data in nbc4va
autopsybayescauseclassifiercodedcomputerdeathestimateimputationlearningmachinemdsmillionnaivenbcprobabilitystudytheoryvaverbal
Last updated from:2e25fd0a47. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 139 | ||
| source / vignettes | OK | 170 | ||
| linux-release-x86_64 | OK | 149 | ||
| macos-release-arm64 | OK | 150 | ||
| macos-oldrel-arm64 | OK | 146 | ||
| windows-devel | OK | 98 | ||
| windows-release | OK | 79 | ||
| windows-oldrel | OK | 100 | ||
| wasm-release | OK | 120 |
Exports:csmf.nbcinternalCheckNBCinternalCheckNBCSummaryinternalGetCauseMetricsinternalGetCSMFAccinternalGetCSMFMaxErrorinternalGetMetricsinternalNBCinternalRoundFixedSuminternalSubAsRestnbcnbc4vaGUInbc4vaIOova2nbctopCOD.nbc
Dependencies:base64encbslibcachemclicommonmarkdigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlifecyclemagrittrmemoisemimeotelpromisesR6rappdirsRcpprlangsassshinysourcetoolswithrxtable
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate predicted CSMFs from a NBC model | csmf.nbc |
| Train a NBC model | nbc |
| nbc4va: Bayes Classifier for Verbal Autopsy Data | nbc4va |
| Example of clean data in nbc4va | nbc4vaData |
| Example of unclean data in nbc4va | nbc4vaDataRaw |
| Web-based graphical user interface in nbc4va | nbc4vaGUI |
| Run nbc4va using file input and output | nbc4vaIO |
| Translate open verbal autopsy arguments to train a NBC model | ova2nbc |
| Bar plot of top predicted causes from a NBC model | plot.nbc |
| Print top predicted causes from a NBC model | print.nbc_summary |
| Summarize a NBC model with metrics | summary.nbc |
| Cause of death predictions from a NBC model | topCOD.nbc |
